PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G0116
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 374aa    MW: 43241.3 Da    PI: 7.8139
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G0116genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix86.14.2e-27104188186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rW++qe+l+L+e+r +++ +++++++k+plW+e s+ m +e g++rs k+C+ek+enl+k+ykk+k+++ +r  ++ +++++f+qle
  Gh_D13G0116 104 RWPRQETLTLLEIRIRLDPKFKEANQKGPLWDELSRIMaEEYGYQRSGKKCREKFENLHKYYKKTKQRKAGR--QDGKNYRFFRQLE 188
                  8*************************************7788****************************97..66678******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.237103162IPR017877Myb-like domain
PfamPF138374.8E-19103188No hitNo description
CDDcd122031.66E-21103169No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MDMVDQNGPP HLRRSLPMRT HFPVPHPEPT EPYFAHINMA SPSPVPYHEP FMAPLPSRLV  60
RFSHNHYPSA SPTTSVAASA SIPSATTLFG GSRWGNITNG GNSRWPRQET LTLLEIRIRL  120
DPKFKEANQK GPLWDELSRI MAEEYGYQRS GKKCREKFEN LHKYYKKTKQ RKAGRQDGKN  180
YRFFRQLELL YGETTDQCPT VLYQTSNNPM NQRNHHEEEK KPSDQSLGVS NSSEFETSSS  240
ENNADNEVSA FTKVKDFMES QMNKLIDSQD VWMERMLKAI EDKDQERLSK EEEWRRQETA  300
LLDKEHEIWV KERAWVEARD FALMEVVKNF TRKRVLEVSS SSSSAERPVG YTQQGISSLI  360
HSLGQAWNQD SSNI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461910.10.0PREDICTED: trihelix transcription factor PTL-like
SwissprotQ9LZS01e-80PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A0D2W1S00.0A0A0D2W1S0_G
STRINGPOPTR_0008s02580.11e-107(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2429134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.14e-77Trihelix family protein